| Relative abundance (percent of total sequences) | |||||||
---|---|---|---|---|---|---|---|---|
 | 1 d | 56 d | ||||||
Taxon | Control | Model | hsryfm 1301 | hsryfm 1301-f | Control | Model | hsryfm 1301 | hsryfm 1301-f |
Actinobacteria | 0.10 ± 0.01 | 0.17 ± 0.02 | 0.20 ± 0.01 | 0.13 ± 0.01 | 0.27 ± 0.01 | 0.17 ± 0.02 | 0.13 ± 0.01 | 0.13 ± 0.01 |
Collinsella | 0.00 ± 0.00 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.06 ± 0.01 | 0.17 ± 0.02* | 0.09 ± 0.001 | 0.10 ± 0.01 | 0.10 ± 0.01** |
Bacteroidetes | 44.00 ± 2.50 | 46.80 ± 1.56 | 44.40 ± 2.12 | 39.10 ± 1.20 | 27.63 ± 1.53** | 35.03 ± 1.20** | 45.50 ± 2.62 | 40.33 ± 1.72 |
Bacteroides | 1.47 ± 0.21 | 2.43 ± 0.12 | 2.33 ± 0.15 | 1.93 ± 0.20 | 1.10 ± 0.16 | 1.40 ± 0.11* | 4.50 ± 0.26** | 3.33 ± 0.28** |
Barnesiella | 0.10 ± 0.01 | 0.07 ± 0.01 | 0.08 ± 0.02 | 0.08 ± 0.01 | 0.17 ± 0.01 | 0.10 ± 0.01 | 0.00 ± 0.00* | 0.00 ± 0.00* |
Parabacteroides | 0.30 ± 0.02 | 0.47 ± 0.03 | 0.40 ± 0.02 | 0.33 ± 0.01 | 0.20 ± 0.01 | 0.30 ± 0.02* | 0.45 ± 0.01* | 0.40 ± 0.01 |
Alistipes | 0.30 ± 0.02 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.13 ± 0.01 | 0.10 ± 0.01* | 0.17 ± 0.01* | 0.05 ± 0.01* | 0.13 ± 0.01 |
Prevotella | 20.47 ± 1.02 | 22.77 ± 1.13 | 18.93 ± 1.08 | 17.67 ± 1.12 | 16.10 ± 2.03* | 14.83 ± 1.16** | 21.03 ± 1.15* | 17.57 ± 1.09 |
Deferribacteres | 0.10 ± 0.01 | 0.10 ± 0.02 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.20 ± 0.01* | 0.10 ± 0.01 | 0.10 ± 0.02 | 0.17 ± 0.02* |
Mucispirillum | 0.10 ± 0.01 | 0.10 ± 0.02 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.13 ± 0.01 | 0.10 ± 0.01 | 0.10 ± 0.02 | 0.17 ± 0.02* |
Firmicutes | 31.80 ± 2.05 | 25.83 ± 1.53 | 28.20 ± 1.74 | 32.90 ± 1.85 | 41.80 ± 2.05* | 37.03 ± 1.64* | 23.23 ± 1.26* | 27.57 ± 1.02* |
Lactobacillus | 0.10 ± 0.02 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.10 ± 0.02 | 0.12 ± 0.01 | 0.10 ± 0.02 | 0.17 ± 0.01* | 0.27 ± 0.02* |
Butyrivibrio | 0.13 ± 0.01 | 0.15 ± 0.01 | 0.07 ± 0.01 | 0.10 ± 0.01 | 0.15 ± 0.01 | 0.10 ± 0.01 | 0.20 ± 0.02* | 0.27 ± 0.02** |
Dorea | 0.13 ± 0.02 | 0.14 ± 0.01 | 0.17 ± 0.02 | 0.17 ± 0.02 | 0.09 ± 0.01 | 0.23 ± 0.01* | 0.12 ± 0.01* | 0.10 ± 0.01* |
Enterococcus | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.15 ± 0.01* | 0.37 ± 0.01** | 0.05 ± 0.01* | 0.06 ± 0.01* |
Oscillibacter | 1.63 ± 0.14 | 1.60 ± 0.11 | 2.07 ± 0.16 | 2.60 ± 0.21 | 2.33 ± 0.18* | 3.37 ± 0.31** | 1.43 ± 0.13* | 1.83 ± 0.18* |
Ruminococcus | 0.30 ± 0.02 | 0.10 ± 0.01 | 0.20 ± 0.01 | 0.20 ± 0.01 | 0.57 ± 0.04** | 0.37 ± 0.04** | 0.16 ± 0.02* | 0.17 ± 0.02* |
Allobaculum | 0.20 ± 0.01 | 0.27 ± 0.02 | 0.20 ± 0.01 | 0.20 ± 0.01 | 0.24 ± 0.02 | 0.10 ± 0.01* | 0.47 ± 0.03** | 0.27 ± 0.02 |
Acetanaerobacterium | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.07 ± 0.01 | 0.00 ± 0.00 | 0.10 ± 0.01* | 0.00 ± 0.00 | 0.10 ± 0.01 | 0.03 ± 0.001* |
Holdemania | 0.00 ± 0.00 | 0.07 ± 0.01 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.00 ± 0.00* | 0.10 ± 0.01* | 0.03 ± 0.01* |
Proteobacteria | 5.50 ± 1.05 | 8.03 ± 1.62 | 7.43 ± 1.16 | 10.00 ± 1.78 | 6.40 ± 0.76 | 6.80 ± 0.85 | 9.67 ± 1.13 | 12.30 ± 1.19 |
Campylobacter | 0.13 ± 0.01 | 0.13 ± 0.02 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.11 ± 0.01 | 0.12 ± 0.01 | 0.00 ± 0.00* | 0.00 ± 0.00* |
Helicobacter | 0.97 ± 0.12 | 1.17 ± 0.19 | 0.77 ± 0.05 | 2.40 ± 0.19 | 1.27 ± 0.22 | 1.20 ± 0.15 | 1.13 ± 0.21 | 1.27 ± 0.16* |
Escherichia/Shigella | 0.13 ± 0.01 | 0.10 ± 0.01 | 0.07 ± 0.01 | 0.13 ± 0.01 | 0.10 ± 0.002 | 0.07 ± 0.01 | 0.00 ± 0.00* | 0.03 ± 0.001* |
Spirochaetes | 0.20 ± 0.02 | 0.43 ± 0.03 | 0.43 ± 0.02 | 0.33 ± 0.02 | 0.60 ± 0.03** | 0.30 ± 0.02* | 0.63 ± 0.04* | 0.50 ± 0.02* |
Treponema | 0.20 ± 0.01 | 0.43 ± 0.03 | 0.43 ± 0.02 | 0.33 ± 0.02 | 0.40 ± 0.04** | 0.30 ± 0.02* | 0.60 ± 0.03* | 0.50 ± 0.04* |
Verrucomicrobia | 4.30 ± 0.32 | 4.53 ± 0.36 | 4.50 ± 0.38 | 2.17 ± 0.23 | 2.63 ± 0.31* | 2.00 ± 0.18** | 5.73 ± 0.51* | 3.73 ± 0.32* |
Akkermansia | 4.23 ± 0.30 | 4.50 ± 0.35 | 4.50 ± 0.38 | 2.13 ± 0.21 | 2.60 ± 0.29* | 2.00 ± 0.18** | 5.73 ± 0.51* | 3.70 ± 0.25* |
TM7 | 0.10 ± 0.01 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.10 ± 0.01 | 0.10 ± 0.01 | 0.10 ± 0.01* | 0.00 ± 0.00 | 0.00 ± 0.00* |
Other | 13.90 ± 1.35 | 14.03 ± 1.42 | 14.77 ± 1.51 | 15.13 ± 1.47 | 20.40 ± 2.14* | 18.47 ± 1.78 | 14.90 ± 1.65 | 16.20 ± 1.55 |